IGVFFI1356PXGT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4670XLUZ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G6_P049_L001_I1

md5sum

115f5252f5850de64436cd68efb41915

Content MD5sum

c62ebb7ca35b042cbd4c26698e6db22b

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X047_G6_L006_P049_S2_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161323743

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5457GRUY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples