IGVFFI1352SDDP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5362QJCF(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G3_P059_L008_I1

md5sum

236e56d805fc23265b5ed2c65afb24ca

Content MD5sum

39099cea0f317825c2299d2799db3945

File Size

412 MB

Submitted File Name

Multiome_ATAC_RP011_G3_L003_P059_S75_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60130177

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0695RJYV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples