IGVFFI1341HUAC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3109FOBL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G4_P061_L001_I1

md5sum

0f009e7161eb95d70223e6c0ae5efe5b

Content MD5sum

7430663923eb3f7647849ff41cc0f9e6

File Size

416 MB

Submitted File Name

Multiome_ATAC_RP013_G4_L004_P061_S4_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54423100

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1576QCMO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples