IGVFFI1334CFUD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5478XCHL(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G7_P025_L001_R2

md5sum

a271c768f650112c1a9ffeee83ae43f9

Content MD5sum

490fd55177cee510ad069684a98eb7fd

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_X025_G7_L007_P025_S1_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

118258257

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6749LEWH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples