IGVFFI1326UVOT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1635NGUE(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G3_P035_L003_R2

md5sum

a6b7c19f8877619bc63fcc9f0f69e2a4

Content MD5sum

1738df17da4621a166ec3aef9465c582

File Size

2.9 GB

Submitted File Name

Multiome_ATAC_X035_G3_L003_P035_S35_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

164529270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7229GVNA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples