IGVFFI1317SOTA

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI1317SOTA/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1317SOTA",
    "aliases": [
        "bradley-bernstein:SS-LS_1691_R2",
        "buenrostro-bernstein:SS-LS_1691_R2"
    ],
    "assay_titles": [
        "SHARE-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011986/",
        "component": "mapping"
    },
    "content_md5sum": "555b655c58e1eb2f7e61c6b43e5386bb",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-02-12T21:32:47.479820+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS8905OYNA/",
        "accession": "IGVFDS8905OYNA",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/primary-cells/IGVFSM0637JXAI/",
                "accession": "IGVFSM0637JXAI",
                "classifications": [
                    "primary cell"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0002371/",
                        "status": "released",
                        "term_name": "bone marrow"
                    }
                ],
                "status": "released",
                "summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (29 years)",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "single-cell ATAC-seq (SHARE-seq)"
    },
    "file_size": 3806,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI1317SOTA/@@download/IGVFFI1317SOTA.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/tabular-files/IGVFFI4279WJVY/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jason-buenrostro/",
        "title": "Jason Buenrostro, Broad"
    },
    "loci_list_for": [],
    "maximum_read_length": 149,
    "md5sum": "9c2275b1ba4ceed1581ff898e9c18fa7",
    "mean_read_length": 149,
    "minimum_read_length": 149,
    "read_count": 50,
    "release_timestamp": "2025-01-14T19:08:36.025601+00:00",
    "s3_uri": "s3://igvf-files/2024/02/12/402260cc-dbf6-4010-bcf5-66d81ea90c18/IGVFFI1317SOTA.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 1691,
    "status": "released",
    "submitted_by": {
        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
        "title": "Siddarth Wekhande"
    },
    "submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-1092_L4_SS-PKR-3_SS-V1-3rd-THIRD_R2.fastq.gz",
    "submitter_comment": "This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.",
    "summary": "R2 reads from sequencing run 1691",
    "upload_status": "validated",
    "uuid": "402260cc-dbf6-4010-bcf5-66d81ea90c18"
}