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INDEXED
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SequenceFile
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IGVFFI1312LCOB
IGVFFI1312LCOB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4267COKK
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X018_G7_P018_L002_I1
md5sum
83bec9056e3eb1ec62471fd2bb8fca31
Content MD5sum
babcb5a54e9578e6f70a30f9df5c36a0
File Size
1.4 GB
Submitted File Name
Multiome_RNA_X018_G7_L007_P018_S23_L002_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HV7NNDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
10
Read Count
223875658
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6380FYLN
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples