IGVFFI1310TVHQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5780VURI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G3_P075_L005_R1

md5sum

6d3a95869d42664366ba1cd9565acf71

Content MD5sum

4eb0cf74ac1e225daca8fb1b289bfc50

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP026_G3_L003_P075_S19_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

191309543

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8010OCED

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples