IGVFFI1299SNWD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1395GBFX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G2_P043_L007_R3

md5sum

09cecbe8335a3fa9a8f423327691c86b

Content MD5sum

31f09d4d0da7b02ee7db4c85650b2ad0

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X042_G2_L002_P043_S20_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55335838

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9775XYEX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples