IGVFFI1298HMQS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2827YRAB(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G1_P007_L003_R3

md5sum

8b32b4c91a3163cd4c45082a7469034e

Content MD5sum

4e9cca791161749eab719c35184165cd

File Size

9.7 GB

Submitted File Name

Multiome_ATAC_X009_G1_L001_P007_S21_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

174761995

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9375ZKWX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples