IGVFFI1285GMWN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5717NYNW(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP023_G4_P067_L002_R2

md5sum

1e842e70ec71eb152cb3cc0044bf16d2

Content MD5sum

006d5a222266f46c74667638689f90c8

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP023_G4_L004_P067_S16_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65688911

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9853HKYG

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 52 years) posterior cingulate gyrus tissue; Homo sapiens (male, 87 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples