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INDEXED
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SequenceFile
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IGVFFI1284RQKM
IGVFFI1284RQKM
released
validated
Json view
File Set
IGVFDS9002DRHP
(reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P017-R1
md5sum
b8cc2e3d43a8c9ca5b8fd52626572a85
Content MD5sum
9f8354421824d09dad2027a7e1e55092
File Size
6.2 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool17.R1.fastq.gz
Checkfiles Version
v17
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKVM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
44454996
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3069YJLI
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.5 GB
validated
IGVFFI8600YMGO
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
6.7 GB
validated