IGVFFI1242ZYVV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1635NGUE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G3_P035_L003_R1

md5sum

9b32edbd3d29e3a5ec09327b4a217d5f

Content MD5sum

92ea9de229ede0d6d778e1d54b4dc569

File Size

9.0 GB

Submitted File Name

Multiome_ATAC_X035_G3_L003_P035_S35_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

164529270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7229GVNA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples