IGVFFI1228HXNH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7013MCCH(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G6_P060_L005_I1

md5sum

d694289ba516fa58091d3953d3fa69f0

Content MD5sum

c7880f67d0322f3458057fd54996b8a4

File Size

337 MB

Submitted File Name

Multiome_RNA_RP012_G6_L006_P060_S38_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50938350

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5046SGAL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples