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IGVFFI1215RCAP

released
validated
File Set
IGVFDS6243XJYN(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp0_rna_10x1_NGS1_r2
md5sum
f604d5334ebe9b3e177fc2eca39f73a1
Content MD5sum
c0c60ef6993d8ef411d2a3f8bcb535dc
File Size
30 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230622_IGVF0_McGinnis/GEX/GEX2_S2_L003_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7GYDSX5
Lane
3
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
90
Read Count
595283947

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
168 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1215RCAP, IGVFFI5758URSR, IGVFFI4517STPG, IGVFFI8677MRVW
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford