IGVFFI1204NCRP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5927HVQQ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G4_P075_L004_R2

md5sum

154b76847bd12a065f46e317bfd2fc35

Content MD5sum

0b3afbb6a870f2b3c6438de381e3adeb

File Size

3.1 GB

Submitted File Name

Multiome_ATAC_RP026_G4_L004_P075_S20_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

179492499

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1367EGUO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples