IGVFFI1179HRRF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7843JHRO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G4_P041_L003_R1

md5sum

4d2bdbe111b06daff12a2f5d52491aae

Content MD5sum

585ea0fbd37a4856a27a9b04f91b18d0

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_X041_G4_L004_P041_S14_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70369581

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0728SZZR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples