IGVFFI1165HQMY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3166POHS(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X025_G2_P023_L003_R2

md5sum

415f3ef41e1ef0638a7f835fe6d8bb5d

Content MD5sum

47c39965c2aa9799af7bbed569913059

File Size

3.0 GB

Submitted File Name

Multiome_ATAC_X025_G2_L002_P023_S34_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

165164926

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2452FKKK

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples