IGVFFI1147XVZB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8957DHSL(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G6_P057_L002_R2

md5sum

16a8b7d5e5bcf9cb81a30fe7e4e06765

Content MD5sum

d9096e59f7476cd2ef16621b6c9533a8

File Size

691 MB

Submitted File Name

Multiome_ATAC_RP009_G6_L006_P057_S14_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

39579348

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3263SQDP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples