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IGVFFI1141CCDX

released
validated
File Set
IGVFDS2143LCWD(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp13_multi_10x2_NGS1_r1
md5sum
63d094c5acf25a8f2ce1aab895395b3d
Content MD5sum
0a688ad82b54613e40c4c5c614deb3d4
File Size
162 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF13_McGinnis/MULTI/FASTQ/igvf13_s2_multi_S6_L001_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22HHHWLT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
7787665

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
62 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1141CCDX, IGVFFI8691TJUW, IGVFFI7629CSKK, IGVFFI3497CDFB
Ansuman Satpathy, Stanford
1.3 KB
validated