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INDEXED
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SequenceFile
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IGVFFI1138GAAK
IGVFFI1138GAAK
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0646FGSI
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G7_P056_L008_R1
md5sum
1a62ba0c0ad2c04f3dad5077b677a269
Content MD5sum
3860cb42d46a5e5d1615dbc7f822597f
File Size
1.0 GB
Submitted File Name
Multiome_RNA_RP006_G7_L007_P056_S86_L008_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHVLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
51694819
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6003RYZR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples