IGVFFI1123UWTG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0028AWOA(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G7_P061_L004_R2

md5sum

41dd65f31fb09db24015bd64a11ca748

Content MD5sum

c7aac36a1856a2c08c876628a2f2bbab

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_RP013_G7_L007_P061_S7_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58918470

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7012MRMQ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples