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SequenceFile
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IGVFFI1109IMQA
IGVFFI1109IMQA
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3136TLZY
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G2_P056_L004_I2
md5sum
9a2a09f6ce0aabe11adcc65c15d8c687
Content MD5sum
e0cb3109de7b950fd0a43252a3958a1d
File Size
384 MB
Submitted File Name
Multiome_RNA_RP006_G2_L002_P056_S22_L004_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
225LGWLT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
59682271
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5801EHME
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples