IGVFFI1108PSQB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2479YVKW(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G7_P075_L004_R3

md5sum

99e010d77a54d3f2259dc15f832998b3

Content MD5sum

c502053138bdc549953ebbaa2f831ca4

File Size

13 GB

Submitted File Name

Multiome_ATAC_RP026_G7_L007_P075_S23_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

193369496

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6899HSQU

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples