IGVFFI1099PVIG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6834GIYR(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP024_G3_P067_L004_I1

md5sum

02082167535d5b5ba82ab103f417f282

Content MD5sum

5eda3ab1c9f380b52034b2e13432ae14

File Size

507 MB

Submitted File Name

Multiome_ATAC_RP024_G3_L003_P067_S19_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65047774

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2219CEMB

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples