IGVFFI1099MUFT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3028RZBD(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G7_P055_L003_I1

md5sum

1f4a10b75e432c3753c2406c46f285cc

Content MD5sum

27ed99c96ee9bbc06990ea157bc6f0fa

File Size

497 MB

Submitted File Name

Multiome_ATAC_RP005_G7_L007_P055_S3_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70439243

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3222RGNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples