IGVFFI1098VNXB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0585JEMM(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G2_P055_L001_R1

md5sum

ec3575dbb4c6f400ef13d390ee549afb

Content MD5sum

bf41cb76e768ce7e197529b906031332

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP006_G2_L002_P055_S6_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67247900

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5801EHME

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples