IGVFFI1098RMRK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6197EMPG(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G1_P057_L001_R3

md5sum

99e288b0df29a960ca90e608255cd1d6

Content MD5sum

7e8812c13c875fd292165d4e3a6cb0d8

File Size

984 MB

Submitted File Name

Multiome_ATAC_RP008_G1_L001_P057_S1_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

31956586

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3315GFKX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples