IGVFFI1095XYMJ

released

validated

File Set

IGVFDS8347SZOX(CRISPR interference FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

guillaume-lettre:BP_screen_KRAB_FL_R1_1_read2

md5sum

73d95cb1ed43d0152a9bf69abb2fc921

Content MD5sum

7191557e40a0e5e0965df6f3144efda7

File Size

3.9 GB

Submitted File Name

/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/CRISPR_IGVF_20230720/samples/NS.X0085.005.IndexR1_09.1BPR1_FL_R2.fastq.gz

Checkfiles Version

Legacy version of checkfiles

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Sequencing Kit

NovaSeq 6000 SP Reagent Kit v1.5

Illumina Read Type

Average Read Length

151

Read Count

70084240

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8877VFZU

InVitroSystem

TeloHAEC

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transduced (lentivirus) with a guide library