IGVFFI1080GNFH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5090QXVJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G5_P071_L007_R1

md5sum

cf53ee13f105bc0cd4d6004a4b9d264e

Content MD5sum

af889d05a357a14b16217976b67ea998

File Size

12 GB

Submitted File Name

Multiome_ATAC_X053_G5_L005_P071_S49_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

166407679

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4261OSAU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples