IGVFFI1079FNVT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9248YEGX(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP021_G2_P066_L007_R1

md5sum

96bbf1c7687b6d9ba3bd3b8f49d42076

Content MD5sum

c2d82743e9f04a1ce4c401a4cec4aac5

File Size

1.3 GB

Submitted File Name

Multiome_RNA_RP021_G2_L002_P066_S40_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257GYLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66601148

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2242CVZD

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples