IGVFFI1078UDHL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7601MJZI(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP031_G8_P079_L007_R3

md5sum

a36d79fbf7c238e2fd81efb5a63ce700

Content MD5sum

5ed8f72575955a2155f1e717093903ee

File Size

10 GB

Submitted File Name

Multiome_ATAC_RP031_G8_L008_P079_S16_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

147063875

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9971ETBE

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples