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IGVFFI1071QXDC

released
validated
File Set
IGVFDS9737YNSX(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp17_atac_10x2_NGS4_r1
md5sum
d1f70ed8b10f5ca96f07c2f41dc1ca0a
Content MD5sum
197eae83ea2b4b87a98c8dd48201c746
File Size
7.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/ATAC/CMAS19_ATAC2_S45_L008_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NF33LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
235190582

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.8 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1071QXDC, IGVFFI7868TYBT, IGVFFI2133JUOD, IGVFFI1550TIXN
Ansuman Satpathy, Stanford
1.4 KB
validated