IGVFFI1065EMPW

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI1065EMPW/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1065EMPW",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "8ee02f4c05f15f1c9bbc70b6f4fa75ca",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-14T08:26:47.796105+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS0378JGOP/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS0378JGOP",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "data_use_limitation_summaries": [
37            "no certificate"
38        ],
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM9503ZUAX/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM9503ZUAX",
49                "classifications": [
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0001388/",
58                        "status": "released",
59                        "term_name": "gastrocnemius"
60                    },
61                    {
62                        "@id": "/sample-terms/UBERON_0002113/",
63                        "status": "released",
64                        "term_name": "kidney"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus WSB/EiJ (male, 69 days) kidney tissue; ... and 126 more samples",
69                "taxa": "Mus musculus",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "Parse SPLiT-seq"
75    },
76    "file_size": 12420726182,
77    "flowcell_id": "H7TLWDSX7",
78    "gene_list_for": [],
79    "href": "/sequence-files/IGVFFI1065EMPW/@@download/IGVFFI1065EMPW.fastq.gz",
80    "illumina_read_type": "R1",
81    "input_file_for": [
82        "/matrix-files/IGVFFI1265JCEM/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ali-mortazavi/",
87        "title": "Ali Mortazavi, UCI"
88    },
89    "lane": 2,
90    "loci_list_for": [],
91    "maximum_read_length": 140,
92    "md5sum": "54cdeb7ec9c21ab0b95948edb2f63466",
93    "mean_read_length": 140,
94    "minimum_read_length": 140,
95    "quality_metrics": [],
96    "read_count": 180595231,
97    "read_names": [
98        "Read 1"
99    ],
100    "release_timestamp": "2025-04-19T01:27:03.531630+00:00",
101    "s3_uri": "s3://igvf-files/2023/10/14/a59c0bc9-287b-4804-999c-b7f0ea5bb14e/IGVFFI1065EMPW.fastq.gz",
102    "schema_version": "15",
103    "seqspecs": [
104        "/configuration-files/IGVFFI3725SKLM/"
105    ],
106    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
107    "sequencing_platform": {
108        "@id": "/platform-terms/EFO_0008637/",
109        "status": "released",
110        "term_name": "Illumina NovaSeq 6000"
111    },
112    "sequencing_run": 6,
113    "status": "released",
114    "submitted_by": {
115        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
116        "title": "Diane Trout"
117    },
118    "submitted_file_name": "igvf_010/nova1/igvf_010_B13_D_nova_N1_L002_R1.fastq.gz",
119    "summary": "R1 reads from sequencing run 6",
120    "upload_status": "validated",
121    "uuid": "a59c0bc9-287b-4804-999c-b7f0ea5bb14e"
122}