IGVFFI1059ZGDQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8806FBIC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G5_P029_L001_R1

md5sum

56ab90a289103d4cdfd7d125019c9aad

Content MD5sum

9feda1de1b6a716e9d3aa816d17592ae

File Size

11 GB

Submitted File Name

Multiome_ATAC_X029_G5_L005_P029_S3_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

203676586

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2386YVCC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples