IGVFFI1057SNBJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3411RFHG(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G7_P013_L001_R3

md5sum

5b1fd7e1392d3719b827a755b128e425

Content MD5sum

15ee57cdaf0f890ea72aa17605401ed3

File Size

7.5 GB

Submitted File Name

Multiome_ATAC_X015_G7_L007_P013_S13_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

231295195

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5630CGRI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples