IGVFFI1055NWGS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7788KKVV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G2_P061_L002_I1

md5sum

4238246dba63b3750bc90337b9286614

Content MD5sum

1199baea5368c647d99fea353b5c3b25

File Size

537 MB

Submitted File Name

Multiome_ATAC_RP014_G2_L002_P061_S10_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

70751155

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7335HESV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples