{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI1055BRCU/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI1055BRCU",
"aliases": [
"jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinD-PCRrep2_R2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI1055BRCU](/sequence-files/IGVFFI1055BRCU/) has in progress subobject auxiliary set [IGVFDS9517URQU](/auxiliary-sets/IGVFDS9517URQU/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI1055BRCU/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "79aed06c8ceedf8a64036cf2ea97b5b3",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:03.747922+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS9517URQU/",
"file_size": 14571209,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI1055BRCU/@@download/IGVFFI1055BRCU.fastq.gz",
"illumina_read_type": "R2",
"index": "CCTACCAT:ACTG",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "8f8c05b78cd437d061c4072aa578c2a0",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 407132,
"release_timestamp": "2023-12-21T00:12:09.250738+00:00",
"s3_uri": "s3://igvf-files/2023/12/05/ff5aa3f3-b6b3-49d1-9067-0d2ddcc64388/IGVFFI1055BRCU.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "220829_pPPIF_JurkatVFF-Jurkat-PE2A-BFP-pPPIF-Amp_pPPIF2_S18-BioRep3-FFRep2-BinD-PCRrep2_S208_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "ff5aa3f3-b6b3-49d1-9067-0d2ddcc64388"
}