IGVFFI1054NNSE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6769MHJX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G3_P042_L002_I1

md5sum

0bf0fea8c3bce6ce8cb59845f0348f1f

Content MD5sum

01247d536396751360930fff83983883

File Size

330 MB

Submitted File Name

Multiome_RNA_X041_G3_L003_P042_S13_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

58466140

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5674WWIP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples