IGVFFI1040TMPS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6812JLHX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G4_P051_L005_R3

md5sum

1d5347e9903314c516176e89f50d9edd

Content MD5sum

607bf12b93bf33b91e226e8c32a23da7

File Size

98 MB

Submitted File Name

Multiome_ATAC_RP002_G4_L004_P051_S32_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

3083131

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6197WJXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples