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IGVFFI0992VCWH

released
validated
File Set
IGVFDS5192VPKQ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 63
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1981_R2
bradley-bernstein:SS-LS_63_R2
buenrostro-bernstein:SS-LS_1981_R2
buenrostro-bernstein:SS-LS_63_R2
md5sum
a716bbeb8c4b7b523790a79392195145
Content MD5sum
acc2f0e7b0f1af4043463d90fc48ca01
File Size
1.0 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-134_L1_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
63
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
21245391

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
367 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6975THFK, IGVFFI0992VCWH
Jason Buenrostro, Broad
1.2 KB
validated