IGVFFI0990SLQI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3248CAFJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G3_P051_L006_R1

md5sum

0bd38472036f18d84ec3cf71e9a71b78

Content MD5sum

7010da6e333d8bdd62c828a1f88911e7

File Size

2.6 GB

Submitted File Name

Multiome_ATAC_RP002_G3_L009_P051_S31_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

87791728

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6307OPWX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples