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INDEXED
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SequenceFile
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IGVFFI0967YCNH
IGVFFI0967YCNH
released
validated
Json view
File Set
IGVFDS3991RWMW
(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 2303
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2303_R1
buenrostro-bernstein:SS-LS_2303_R1
md5sum
fdbb70bed559207e47f6e1105af8c416
Content MD5sum
5c6db5dc7ce2883f77f6704bc127dfc5
File Size
439 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-67_L1_SS-PKR-6_SS-V2-PLATE2-1st-THIRD_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2303
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
16692001
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM1036KMAA
PrimaryCell
bone marrow
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 6)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated