IGVFFI0966ULVZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5556IRJC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G7_P059_L006_R2

md5sum

b59f670476e1f336d495b3402da7c44e

Content MD5sum

0617f3299af62f33feb2f1b0d62a4a09

File Size

854 MB

Submitted File Name

Multiome_ATAC_RP012_G7_L007_P059_S87_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

48419552

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6267UURV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples