IGVFFI0951KTTB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3046IPKB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X046_G3_P047_L003_R1

md5sum

213c4d0a7e4cfec8f67cef15fbf35130

Content MD5sum

752ba390bb11c51e9197276299b73fef

File Size

7.9 GB

Submitted File Name

Multiome_ATAC_X046_G3_L003_P047_S15_L003_R1_001.fastq.gz

Checkfiles Version

v20

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

255722526

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5266CSDR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples

Attribution

Award

HG012076

Principal Investigator(s)

Ansuman Satpathy

Contact P.I.

Ansuman Satpathy

Lab

Ryan Corces, Gladstone Institute UCSF