IGVFFI0940BGOH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5017LSEH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G8_P077_L003_R1

md5sum

8b7db8f1c033107f338887e236cad095

Content MD5sum

f1aeff645ef13002393344220935d2cc

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP028_G8_L008_P077_S26_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62187708

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7205BZYS

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples