IGVFFI0939MQDG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6474VMQQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X026_G2_P026_L002_R1

md5sum

4bafd7d740312cae0f1e313d51f2051e

Content MD5sum

33fb1ba6555367333decf1e629da87b0

File Size

5.7 GB

Submitted File Name

Multiome_RNA_X026_G2_L002_P026_S3_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

272677829

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8905KCPF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples