IGVFFI0931WIDK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1106CBKV(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP008_G2_P058_L004_I1

md5sum

c97476120389175d4d8067736f31eec3

Content MD5sum

23c505c7bc2140fb7d534f52e94e29ce

File Size

422 MB

Submitted File Name

Multiome_RNA_RP008_G2_L002_P058_S2_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65156599

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5834KBZJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples