Home

IGVFFI0925YNIR

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8967LLYA(single-nucleus ATAC-seq (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
harinder-singh:donor1_Bcell_multiome_ATAC_NGS_day3_4_L002_R2
md5sum
b21eae44b9dfddadafe14c9287cf8454
Content MD5sum
e6bba8f6922de70711a12fa002c62652
File Size
2.5 GB
Submitted File Name
/ix/djishnu/peasena/primary_multiome/donor1_upmc/fastqs/scATAC/NP002_02_120222_Singh_Multiome_scATAC_remade_SIN4251A5_S2_L002_R2_001.fastq.gz
Checkfiles Version
v17
Attribution
Harinder Singh, University of Pittsburgh

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Lane
2
Sequencing Kit
NovaSeq 6000 S1 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
24
Read Count
145076941

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days

Files Derived From This File

3 items
tsv
fragments
fragments
Harinder Singh, University of Pittsburgh
1.9 GB
validated
hdf5
raw feature barcode matrix
cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
405 MB
validated
csv
barcode to element mapping
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated