IGVFFI0923BGBQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2859PJGU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X017_G4_P015_L003_R1

md5sum

48babdefee59f3df51c66ac8345a4149

Content MD5sum

3709b4e723ed0b8e73584eb7d986738b

File Size

7.4 GB

Submitted File Name

Multiome_ATAC_X017_G4_L004_P015_S26_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

239419080

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6070GNPG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples